Motif View

Internal ID 18433360
Source Database TransTermHP TERM 34
Feature Type terminator
Name
Rho-independent transcription terminator TERM 34
Sequence CCCGCGTACCCGCAAGGGACGCGGG
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Start 134711
End 134735
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE14884 AZPAE14884_contig_15, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCGTCGAGGCAGAGG(5' tail) CCCGCGTACCC(5' stem) GCAA(loop) GGG-ACGCGGG(3' stem) TTTTTTCATGCCCGG(3' tail). Confidence: 100. gap 1, opp_overlap 134730

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685