Motif View

Internal ID 18425758
Source Database TransTermHP TERM 4
Feature Type terminator
Name
Rho-independent transcription terminator TERM 4
Sequence GCCCGAGGCCTGTGCCTCGGGC
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Start 24271
End 24292
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE14891 AZPAE14891_contig_9, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGACCGATGAAAAAA(5' tail) GCCCGAGGC(5' stem) ACAG(loop) GCCTCGGGC(3' stem) TTTTCGTCACCAGCG(3' tail). Confidence: 100. opp_overlap 24271

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685