Motif View

Internal ID 18418672
Source Database TransTermHP TERM 7
Feature Type terminator
Name
Rho-independent transcription terminator TERM 7
Sequence GGCCCGCCTCGTGCGGGCC
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Start 53178
End 53196
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE15025 AZPAE15025_contig_9, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCGGCGGACGCAAAA(5' tail) GGCCCGC(5' stem) ACGAG(loop) GCGGGCC(3' stem) TGGGGAACATGGCGA(3' tail). Confidence: 95.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685