Motif View

Internal ID 18418608
Source Database TransTermHP TERM 83
Feature Type terminator
Name
Rho-independent transcription terminator TERM 83
Sequence GCCCCGCCCCGCGGGGC
Look for more occurrences
Start 298875
End 298891
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE15025 AZPAE15025_contig_6, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GTTGGCGATGAAAAA(5' tail) GCCCCGC(5' stem) GGG(loop) GCGGGGC(3' stem) TCTTCAGGGAGGGCT(3' tail). Confidence: 100. opp_overlap 298875

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685