Motif View

Internal ID 18418345
Source Database TransTermHP TERM 16
Feature Type terminator
Name
Rho-independent transcription terminator TERM 16
Sequence GGCGCGGTCCGCCGCCGGGCCGCGCC
Look for more occurrences
Start 81557
End 81582
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE15025 AZPAE15025_contig_34, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AGGACGGGGGGAAAC(5' tail) GGCGCGGCCCG(5' stem) GCGG(loop) CGGACCGCGCC(3' stem) CTCGGCTTCAGCGGT(3' tail). Confidence: 90. overlap 81556

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685