Motif View

Internal ID 18408412
Source Database TransTermHP TERM 65
Feature Type terminator
Name
Rho-independent transcription terminator TERM 65
Sequence GCCCCGCCTCGCGCGGGGC
Look for more occurrences
Start 268155
End 268173
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE14925 AZPAE14925_contig_6, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CATGAATCCCGAAAA(5' tail) GCCCCGC(5' stem) CTCGC(loop) GCGGGGC(3' stem) TTTTTGTTTTATCCT(3' tail). Confidence: 100. opp_overlap 268155, overlap 268149

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685