Motif View

Internal ID 18408175
Source Database TransTermHP TERM 3
Feature Type terminator
Name
Rho-independent transcription terminator TERM 3
Sequence CGACGGGCCCGGACGACTTGGGGCCCGTCG
Look for more occurrences
Start 41425
End 41454
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE14925 AZPAE14925_contig_35, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GTCAGCGCTTTGACC(5' tail) CGACGGGCCCGGA(5' stem) CGAC(loop) TTGGGGCCCGTCG(3' stem) TTTTTTGCCGACGCG(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685