Motif View

Internal ID 18407882
Source Database TransTermHP TERM 26
Feature Type terminator
Name
Rho-independent transcription terminator TERM 26
Sequence GCCCGGCATTCGCCGGGC
Look for more occurrences
Start 100348
End 100365
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE14925 AZPAE14925_contig_16, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CAGAACCACGAAAAA(5' tail) GCCCGGC(5' stem) ATTC(loop) GCCGGGC(3' stem) TTTTTCGTTTTAATC(3' tail). Confidence: 100. opp_overlap 100348 100341 100338, overlap 100341

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685