Motif View

Internal ID 18405262
Source Database TransTermHP TERM 9
Feature Type terminator
Name
Rho-independent transcription terminator TERM 9
Sequence GGCCCGTCGTCGACGGGCC
Look for more occurrences
Start 65261
End 65279
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE14928 AZPAE14928_contig_33, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCGGTCCGTGCGGCA(5' tail) GGCCCGTC(5' stem) GTC(loop) GACGGGCC(3' stem) TTTGTCGCGGGCGGG(3' tail). Confidence: 93.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685