Motif View

Internal ID 18404837
Source Database TransTermHP TERM 69
Feature Type terminator
Name
Rho-independent transcription terminator TERM 69
Sequence GCCCCGCCTCGCGCGGGGC
Look for more occurrences
Start 268158
End 268176
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE14928 AZPAE14928_contig_17, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments ACGAATCCCCGAAAA(5' tail) GCCCCGC(5' stem) CTCGC(loop) GCGGGGC(3' stem) TTTTTTGTTTTATCC(3' tail). Confidence: 100. opp_overlap 268158, overlap 268151

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685