Motif View

Internal ID 18403326
Source Database TransTermHP TERM 116
Feature Type terminator
Name
Rho-independent transcription terminator TERM 116
Sequence TCCGCGTTAAACTGCGCGGG
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Start 476977
End 476996
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE15026 AZPAE15026_contig_7, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGAGAGAGGAAAAAA(5' tail) CCCGCGC(5' stem) AGTTTA(loop) ACGCGGA(3' stem) ATTGGCGGTCACGCT(3' tail). Confidence: 91. overlap 476978

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685