Motif View

Internal ID 18400531
Source Database TransTermHP TERM 10
Feature Type terminator
Name
Rho-independent transcription terminator TERM 10
Sequence GCCCCGCCATAGCGGGGC
Look for more occurrences
Start 34251
End 34268
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE14945 AZPAE14945_contig_11, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GATTCGATAAAAGAA(5' tail) GCCCCGC(5' stem) CATA(loop) GCGGGGC(3' stem) TTCTTGTTTTCACGC(3' tail). Confidence: 100. opp_overlap 34248, overlap 34248

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685