Motif View

Internal ID 18389346
Source Database TransTermHP TERM 13
Feature Type terminator
Name
Rho-independent transcription terminator TERM 13
Sequence CGGGGCGCCAAGGCGCCCCG
Look for more occurrences
Start 26574
End 26593
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE14955 AZPAE14955_contig_1, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCTGAGCCGGACCGA(5' tail) CGGGGCGC(5' stem) CAAG(loop) GCGCCCCG(3' stem) TTTCGTTTCCGCCGT(3' tail). Confidence: 95.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685