Motif View

Internal ID 18323998
Source Database TransTermHP TERM 7
Feature Type terminator
Name
Rho-independent transcription terminator TERM 7
Sequence GGCGTCGGAAGACGCC
Look for more occurrences
Start 43817
End 43832
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE15022 AZPAE15022_contig_30, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCCGGATATGAAAAA(5' tail) GGCGTC(5' stem) TTCC(loop) GACGCC(3' stem) CTTTCCTCAATACCA(3' tail). Confidence: 100. opp_overlap 43817 43816

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685