Motif View

Internal ID 18323740
Source Database TransTermHP TERM 51
Feature Type terminator
Name
Rho-independent transcription terminator TERM 51
Sequence GCGACCGGCGCCCGGGCGGCGCCGGTCGC
Look for more occurrences
Start 212337
End 212365
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE15022 AZPAE15022_contig_21, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCGTCGGCGAGAAAC(5' tail) GCGACCGGCGCC(5' stem) GCCCG(loop) GGCGCCGGTCGC(3' stem) CGCTACCTCAGAAGT(3' tail). Confidence: 100. overlap 212336

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685