Motif View

Internal ID 18321129
Source Database TransTermHP TERM 10
Feature Type terminator
Name
Rho-independent transcription terminator TERM 10
Sequence GAAGCCCCGCTATGGCGGGGCTTC
Look for more occurrences
Start 34861
End 34884
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE15055 AZPAE15055_contig_4, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCCGATTCGATAAAA(5' tail) GAAGCCCCGC(5' stem) CATA(loop) GCGGGGCTTC(3' stem) TTGTTTTCACGCGAG(3' tail). Confidence: 100. opp_overlap 34861 34864

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685