Motif View

Internal ID 18305855
Source Database TransTermHP TERM 28
Feature Type terminator
Name
Rho-independent transcription terminator TERM 28
Sequence CGGGGCGCCAAGGCGCCCCG
Look for more occurrences
Start 73903
End 73922
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE14917 AZPAE14917_contig_31, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCGGCGGAAACGAAA(5' tail) CGGGGCGC(5' stem) CTTG(loop) GCGCCCCG(3' stem) TCGGTCCGGCTCAGG(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685