Motif View

Internal ID 18303235
Source Database TransTermHP TERM 8
Feature Type terminator
Name
Rho-independent transcription terminator TERM 8
Sequence GGGTTCCGGCGCCAGCCGGAACCC
Look for more occurrences
Start 60249
End 60272
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE15033 AZPAE15033_contig_8, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GTGTCGGATGGAAAA(5' tail) GGGTTCCGGC(5' stem) TGGC(loop) GCCGGAACCC(3' stem) CTGGGCCAGGATCAG(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685