Motif View

Internal ID 18302589
Source Database TransTermHP TERM 46
Feature Type terminator
Name
Rho-independent transcription terminator TERM 46
Sequence CGCCGGGCTGATGCCCGGCG
Look for more occurrences
Start 199031
End 199050
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE15033 AZPAE15033_contig_2, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GTGCGCAATGAAAAA(5' tail) CGCCGGGC(5' stem) ATCA(loop) GCCCGGCG(3' stem) TTTTCGTTTCCGCCT(3' tail). Confidence: 100. opp_overlap 199031 199026

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685