Motif View

Internal ID 18302345
Source Database TransTermHP TERM 45
Feature Type terminator
Name
Rho-independent transcription terminator TERM 45
Sequence GGCTCACCTCCGGGTGGGCC
Look for more occurrences
Start 134278
End 134297
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE15033 AZPAE15033_contig_10, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGCGGAAAGCAAAAA(5' tail) GGCCCACC(5' stem) CGGA(loop) GGTGAGCC(3' stem) TTTTCGTCGTATTCA(3' tail). Confidence: 100. opp_overlap 134272 134278, overlap 134272 134271

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685