Motif View

Internal ID 18275583
Source Database TransTermHP TERM 102
Feature Type terminator
Name
Rho-independent transcription terminator TERM 102
Sequence GGCCGGCATTCGCCGGCC
Look for more occurrences
Start 264916
End 264933
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE14550 AZPAE14550_contig_6, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCGATCCACGAAAAA(5' tail) GGCCGGC(5' stem) GAAT(loop) GCCGGCC(3' stem) TTTTTCATTCTCGCC(3' tail). Confidence: 100. opp_overlap 264910 264909 264916

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685