Motif View

Internal ID 18274220
Source Database TransTermHP TERM 12
Feature Type terminator
Name
Rho-independent transcription terminator TERM 12
Sequence GCCCGGCCGGAGAGCCGGGC
Look for more occurrences
Start 38500
End 38519
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE14557 AZPAE14557_contig_23, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments ATCAGGCGAAAAAAA(5' tail) GCCCGGC(5' stem) TCTCCG(loop) GCCGGGC(3' stem) CAGACAAAACTCAGG(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685