Motif View

Internal ID 18245592
Source Database TransTermHP TERM 11
Feature Type terminator
Name
Rho-independent transcription terminator TERM 11
Sequence GGCCCGCGCGTCCGCGCGGGCC
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Start 28408
End 28429
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE14817 AZPAE14817_contig_9, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AGCCTCTGAAAGAAA(5' tail) GGCCCGCGC(5' stem) GGAC(loop) GCGCGGGCC(3' stem) TCGGGGGTATCGCTT(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685