Motif View

Internal ID 18245052
Source Database TransTermHP TERM 35
Feature Type terminator
Name
Rho-independent transcription terminator TERM 35
Sequence GCCCCGCCCCGTGCGGGGC
Look for more occurrences
Start 107934
End 107952
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE14817 AZPAE14817_contig_19, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCCGGGCAAGAAAAA(5' tail) GCCCCGC(5' stem) ACGGG(loop) GCGGGGC(3' stem) TTGTTCGACGCGTCG(3' tail). Confidence: 100. opp_overlap 107934

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685