Motif View

Internal ID 18225119
Source Database TransTermHP TERM 10
Feature Type terminator
Name
Rho-independent transcription terminator TERM 10
Sequence GGGCCCGTTCGGGCCC
Look for more occurrences
Start 36602
End 36617
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE13877 AZPAE13877_contig_6, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TCCGGCAATGAAAAA(5' tail) GGGCCC(5' stem) GTTC(loop) GGGCCC(3' stem) TTTTTCATTGTTCCG(3' tail). Confidence: 100. opp_overlap 36602, overlap 36595

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685