Motif View

Internal ID 18221573
Source Database TransTermHP TERM 24
Feature Type terminator
Name
Rho-independent transcription terminator TERM 24
Sequence GAGCAGCCGAGGCTGCTC
Look for more occurrences
Start 80189
End 80206
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE14352 AZPAE14352_contig_23, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TCCGTGAAACGAAAA(5' tail) GAGCAGC(5' stem) CTCG(loop) GCTGCTC(3' stem) TATAGAGTAGTTCGC(3' tail). Confidence: 95. opp_overlap 80191

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685