Motif View

Internal ID 18221260
Source Database TransTermHP TERM 13
Feature Type terminator
Name
Rho-independent transcription terminator TERM 13
Sequence CCCCGGCCTGGCGCCGGGG
Look for more occurrences
Start 34502
End 34520
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE14352 AZPAE14352_contig_10, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGCGCAAAAAGAAAA(5' tail) CCCCGGC(5' stem) GCCAG(loop) GCCGGGG(3' stem) TTTCCATGAGGGTCG(3' tail). Confidence: 100. opp_overlap 34502, overlap 34497

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685