Motif View

Internal ID 18219976
Source Database TransTermHP TERM 4
Feature Type terminator
Name
Rho-independent transcription terminator TERM 4
Sequence GCCCGCTTCGGCGGGC
Look for more occurrences
Start 12542
End 12557
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE14359 AZPAE14359_contig_42, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGGCGGCCATGAAAA(5' tail) GCCCGC(5' stem) CGAA(loop) GCGGGC(3' stem) CTGAACACCAGTGCG(3' tail). Confidence: 90.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685