Motif View

Internal ID 18219826
Source Database TransTermHP TERM 26
Feature Type terminator
Name
Rho-independent transcription terminator TERM 26
Sequence GGGCGCGGGCCAGTATCGGCGCCGCGCCC
Look for more occurrences
Start 74275
End 74303
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE14359 AZPAE14359_contig_27, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TGGGCGAATGAAAAA(5' tail) GGGCGCGG-GCC(5' stem) AGTATC(loop) GGCGCCGCGCCC(3' stem) TTTTGCCGGAGGAGA(3' tail). Confidence: 95. gap 1, opp_overlap 74275

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685