Motif View

Internal ID 18207996
Source Database TransTermHP TERM 67
Feature Type terminator
Name
Rho-independent transcription terminator TERM 67
Sequence GCCCCGCCTTGTGCGGGGC
Look for more occurrences
Start 393742
End 393760
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE14402 AZPAE14402_contig_1, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GATAGAAAGACCGAA(5' tail) GCCCCGC(5' stem) CTTGT(loop) GCGGGGC(3' stem) TTTTATTTAGGAGTA(3' tail). Confidence: 100. opp_overlap 393742 393737 393735

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685