Motif View

Internal ID 18206262
Source Database TransTermHP TERM 21
Feature Type terminator
Name
Rho-independent transcription terminator TERM 21
Sequence GGCGCCTTCGGGCGCC
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Start 169479
End 169494
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE14410 AZPAE14410_contig_17, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGCAGGATGAAAAAA(5' tail) GGCGCC(5' stem) CGAA(loop) GGCGCC(3' stem) TTTTCCCGTTGGGGG(3' tail). Confidence: 100. opp_overlap 169479

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685