Motif View

Internal ID 18205962
Source Database TransTermHP TERM 35
Feature Type terminator
Name
Rho-independent transcription terminator TERM 35
Sequence CCCGCCACCGGTTCCCTGGTTTCCGGTCGGCGGG
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Start 111828
End 111861
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE14410 AZPAE14410_contig_1, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GACGGGCATAAAAAA(5' tail) CCCGCCGACCGG(5' stem) AAACCAGGGAA(loop) CCGGT-GGCGGG(3' stem) TGAAGACGGGATCGG(3' tail). Confidence: 100. gap 1

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685