Motif View

Internal ID 18197964
Source Database TransTermHP TERM 110
Feature Type terminator
Name
Rho-independent transcription terminator TERM 110
Sequence GCCCCGCTATCGCGGGGC
Look for more occurrences
Start 268383
End 268400
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE14443 AZPAE14443_contig_14, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGCCTGCACGAAAAA(5' tail) GCCCCGC(5' stem) GATA(loop) GCGGGGC(3' stem) TTTTTCCTTGCGGGG(3' tail). Confidence: 100. opp_overlap 268383

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685