Motif View

Internal ID 18194083
Source Database TransTermHP TERM 15
Feature Type terminator
Name
Rho-independent transcription terminator TERM 15
Sequence GGCGCCTTCGGGCGCC
Look for more occurrences
Start 53655
End 53670
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE14509 AZPAE14509_contig_20, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCCCCAACGGAAAAA(5' tail) GGCGCC(5' stem) TTCG(loop) GGCGCC(3' stem) TTTTCTCATCCTGCG(3' tail). Confidence: 95. opp_overlap 53655

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685