Motif View

Internal ID 18193922
Source Database TransTermHP TERM 14
Feature Type terminator
Name
Rho-independent transcription terminator TERM 14
Sequence GGGCGCAACGGCCGTGACCGTTGCGCCC
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Start 104331
End 104358
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE14509 AZPAE14509_contig_16, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCTCCTAACGAAGAA(5' tail) GGGCGCAACGG(5' stem) TCACGG(loop) CCGTTGCGCCC(3' stem) TTCCTCCAGACTGCC(3' tail). Confidence: 100. opp_overlap 104331, overlap 104328

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685