Motif View

Internal ID 18192315
Source Database TransTermHP TERM 136
Feature Type terminator
Name
Rho-independent transcription terminator TERM 136
Sequence GCCTCGCCCTGTGCGGGGC
Look for more occurrences
Start 450309
End 450327
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE14526 AZPAE14526_contig_4, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GTTATTTAAGAAAAA(5' tail) GCCCCGC(5' stem) ACAGG(loop) GCGAGGC(3' stem) TTTTTTCATTTTTTC(3' tail). Confidence: 100. opp_overlap 450309 450303, overlap 450303

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685