Motif View

Internal ID 18189891
Source Database TransTermHP TERM 23
Feature Type terminator
Name
Rho-independent transcription terminator TERM 23
Sequence GGCTCACCTCCGGGTGGGCC
Look for more occurrences
Start 71509
End 71528
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE14538 AZPAE14538_contig_15, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TGAATACGACGAAAA(5' tail) GGCTCACC(5' stem) TCCG(loop) GGTGGGCC(3' stem) TTTTTGCTTTCCGCC(3' tail). Confidence: 100. opp_overlap 71503 71509, overlap 71503 71502

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685