Motif View

Internal ID 18183255
Source Database TransTermHP TERM 7
Feature Type terminator
Name
Rho-independent transcription terminator TERM 7
Sequence GCCCGGCCATCGAGCCGGGC
Look for more occurrences
Start 30462
End 30481
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE12140 AZPAE12140_contig_28, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGCGCCCACGAAAAA(5' tail) GCCCGGC(5' stem) TCGATG(loop) GCCGGGC(3' stem) TCTTTCGCTGCGGGT(3' tail). Confidence: 100. opp_overlap 30460 30462, overlap 30446 30447

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685