Motif View

Internal ID 18171991
Source Database TransTermHP TERM 29
Feature Type terminator
Name
Rho-independent transcription terminator TERM 29
Sequence CGGCGCCGGCAACCCCGGCGCCG
Look for more occurrences
Start 137668
End 137690
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE12153 AZPAE12153_contig_14, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCCCCACGACCCAGA(5' tail) CGGCGCCGG(5' stem) CAACC(loop) CCGGCGCCG(3' stem) TTTTATTTTGTGCAA(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685