Motif View

Internal ID 18171854
Source Database TransTermHP TERM 13
Feature Type terminator
Name
Rho-independent transcription terminator TERM 13
Sequence GCCGCCGGCCACAGGGCCGGCGGC
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Start 55572
End 55595
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE12153 AZPAE12153_contig_10, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCCCCGAATGCTTCC(5' tail) GCCGCCGGCC(5' stem) ACAG(loop) GGCCGGCGGC(3' stem) TTCTCACTGACTAGA(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685