Motif View

Internal ID 18166678
Source Database TransTermHP TERM 37
Feature Type terminator
Name
Rho-independent transcription terminator TERM 37
Sequence GGGCGGCCTAGGCCGCCC
Look for more occurrences
Start 82543
End 82560
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE12411 AZPAE12411_contig_44, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGGGAAAACGAAAAA(5' tail) GGGCGGC(5' stem) CTAG(loop) GCCGCCC(3' stem) TTTTTCATGATGGAT(3' tail). Confidence: 100. opp_overlap 82543, overlap 82537 82536

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685