Motif View

Internal ID 18166673
Source Database TransTermHP TERM 32
Feature Type terminator
Name
Rho-independent transcription terminator TERM 32
Sequence GCCCTCGGCACATGCCGGGGGC
Look for more occurrences
Start 64600
End 64621
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE12411 AZPAE12411_contig_44, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGAGCCAAATTCAAA(5' tail) GCCCTCGGC(5' stem) ACAT(loop) GCCGGGGGC(3' stem) TTTTTCGTTATCGGG(3' tail). Confidence: 100. opp_overlap 64600

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685