Motif View

Internal ID 18157938
Source Database TransTermHP TERM 27
Feature Type terminator
Name
Rho-independent transcription terminator TERM 27
Sequence TCCGCGTTAAACTGCGCGGG
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Start 142648
End 142667
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa strain AZPAE12417 AZPAE12417_contig_1, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGAGAGAGGAAAAAA(5' tail) CCCGCGC(5' stem) AGTTTA(loop) ACGCGGA(3' stem) ATTGGCGGTCACGCT(3' tail). Confidence: 91. overlap 142649

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685