Motif View

Internal ID 18151696
Source Database TransTermHP TERM 12
Feature Type terminator
Name
Rho-independent transcription terminator TERM 12
Sequence GGCCACCTTCGGGTGGCC
Look for more occurrences
Start 18503
End 18520
Strand +
Genomic Context
Replicon Pseudomonas fluorescens EGD-AQ6 contig30, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCTTCACCACACAAA(5' tail) GGCCACC(5' stem) TTCG(loop) GGTGGCC(3' stem) TTTGTGCATTCTGAA(3' tail). Confidence: 93. opp_overlap 18503 18499, overlap 18499 18496 18495

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685