Motif View

Internal ID 18143819
Source Database TransTermHP TERM 15
Feature Type terminator
Name
Rho-independent transcription terminator TERM 15
Sequence CGCCGGGTTTAGCCCGGCG
Look for more occurrences
Start 40058
End 40076
Strand -
Genomic Context
Replicon Pseudomonas fluorescens strain C2 contig_28, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGCCAGACAAAAAAA(5' tail) CGCCGGGC(5' stem) TAA(loop) ACCCGGCG(3' stem) TTTTTTTATGCGTTC(3' tail). Confidence: 100. opp_overlap 40058

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685