Motif View

Internal ID 18143396
Source Database TransTermHP TERM 44
Feature Type terminator
Name
Rho-independent transcription terminator TERM 44
Sequence GCCCGCCTCGTGCGGGC
Look for more occurrences
Start 176743
End 176759
Strand -
Genomic Context
Replicon Pseudomonas fluorescens strain C2 contig_15, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGTAGAAAGCAAAAA(5' tail) GCCCGC(5' stem) ACGAG(loop) GCGGGC(3' stem) TTTCTGTGTGTCTTC(3' tail). Confidence: 100. opp_overlap 176737 176743, overlap 176737 176736

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685