Motif View

Internal ID 18139739
Source Database TransTermHP TERM 118
Feature Type terminator
Name
Rho-independent transcription terminator TERM 118
Sequence GGTCACAGCTTCCCAGCTGTGGCC
Look for more occurrences
Start 577471
End 577494
Strand -
Genomic Context
Replicon Pseudomonas lutea strain DSM 17257 Contig002, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCCTAAAACAACAAA(5' tail) GGCCACAGCT(5' stem) GGGA(loop) AGCTGTGACC(3' stem) TATAGAAAAAAACAC(3' tail). Confidence: 95.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685