| Internal ID | 18134726 | Source Database | TransTermHP TERM 42 |
| Feature Type | terminator |
| Name |
Rho-independent transcription terminator TERM 42
|
| Sequence |
GAGGAAGCCGGGAGTTCGAAACGGTTCACCGTAACGGACTCCCGGCTTTTTC Look for more occurrences |
| Start | 161655 |
| End | 161706 |
| Strand | - |
| Genomic Context | |
| Replicon | Pseudomonas nitroreducens strain Aramco J contig6, whole genome shotgun sequence. |
| Evidence |
ECO:0000246
computational combinatorial evidence used in automatic assertion
|
| Additional Comments | GGAGAAGTCGGAAAC(5' tail) GAAAAAGCCGGGAGTCCGTTACGG(5' stem) TGAA(loop) CCGTTTCGAACTCCCGGCTTCCTC(3' stem) AGGCAGGCATCAGCC(3' tail). Confidence: 100. opp_overlap 161661, overlap 161654 161661 |
|
Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685
|