| Internal ID | 18129791 | Source Database | TransTermHP TERM 1172 |
| Feature Type | terminator |
| Name |
Rho-independent transcription terminator TERM 1172
|
| Sequence |
CACTGCATAACCAATGTGGGAGCGGCGCACCGCCGCTCCCACATTTGGTTTTGCGTG Look for more occurrences |
| Start | 5481652 |
| End | 5481708 |
| Strand | + |
| Genomic Context | |
| Replicon | Pseudomonas simiae strain WCS417. |
| Evidence |
ECO:0000246
computational combinatorial evidence used in automatic assertion
|
| Additional Comments | ACAAGTTCTAAGCAA(5' tail) CACTGCATAACC-AATGTGGGAGCGGCG(5' stem) CAC(loop) CGCCGCTCCCACATTTGGTTTTGC-GTG(3' stem) TATTCAGCTGTGGCG(3' tail). Confidence: 100. opp_overlap 5481652 5481662 5481666, overlap 5481655 5481662 5481662 |
|
Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685
|