Motif View

Internal ID 18125291
Source Database TransTermHP TERM 682
Feature Type terminator
Name
Rho-independent transcription terminator TERM 682
Sequence CGCCCGGGCGAGATTCGCTCGGGCG
Look for more occurrences
Start 3036097
End 3036121
Strand -
Genomic Context
Replicon Pseudomonas sp. WCS374.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TTGCAGACAAAAAAA(5' tail) CGCCCGAGCGA(5' stem) ATC(loop) TCGCCCGGGCG(3' stem) TTTTGAGGGCGGATG(3' tail). Confidence: 100. opp_overlap 3036097

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685